mirror of https://github.com/ecmwf/eccodes.git
449 lines
23 KiB
Python
449 lines
23 KiB
Python
#!/bin/env python
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"""
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Unit tests for high level Python interface.
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Author: Daniel Lee, DWD, 2016
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"""
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import os
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from tempfile import NamedTemporaryFile
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import unittest
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from eccodes import GribFile
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from eccodes import GribIndex
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from eccodes import GribMessage
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from eccodes.high_level.gribmessage import IndexNotSelectedError
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from eccodes import BufrFile, BufrMessage
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TESTGRIB = "../../data/high_level_api.grib2"
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TESTBUFR = "../../data/bufr/syno_multi.bufr"
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TEST_OUTPUT = "test-output.codes"
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TEST_INDEX = "test.index"
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TEST_KEYS = ("dataDate", "stepRange")
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TEST_VALUES = 20110225, 0
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SELECTION_DICTIONARY = {}
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for i1 in range(len(TEST_KEYS)):
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SELECTION_DICTIONARY[TEST_KEYS[i1]] = TEST_VALUES[i1]
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TEST_INDEX_OUTPUT = TESTGRIB
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TEST_STEPRANGE = ('0', '12', '18', '24', '6')
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# These keys should be available even if new keys are defined
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KNOWN_GRIB_KEYS = ['7777', 'GRIBEditionNumber', 'N', 'NV',
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'Ni', 'Nj', 'PLPresent', 'PVPresent', 'addEmptySection2',
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'addExtraLocalSection', 'alternativeRowScanning',
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'angleDivisor', 'angleSubdivisions',
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'average', 'backgroundProcess', 'basicAngleOfTheInitialProductionDomain',
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'binaryScaleFactor', 'bitMapIndicator', 'bitmapPresent',
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'bitsPerValue', 'bottomLevel', 'centre',
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'centreDescription', 'cfName', 'cfNameECMF', 'cfVarName',
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'cfVarNameECMF', 'changeDecimalPrecision', 'class',
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'climateDateFrom', 'climateDateTo', 'codedValues',
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'dataDate', 'dataRepresentationTemplateNumber', 'dataTime',
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'day', 'decimalPrecision', 'decimalScaleFactor',
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'deleteCalendarId', 'deleteExtraLocalSection', 'deletePV',
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'discipline', 'distinctLatitudes', 'distinctLongitudes',
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'editionNumber', 'endStep', 'eps',
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'experimentVersionNumber', 'extraLocalSectionPresent',
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'forecastTime', 'g2grid', 'gaussianGridName',
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'genVertHeightCoords', 'generatingProcessIdentifier',
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'getNumberOfValues', 'global', 'globalDomain',
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'grib2LocalSectionNumber', 'grib2LocalSectionPresent',
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'grib2divider', 'gridDefinitionDescription',
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'gridDefinitionTemplateNumber',
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'gridDescriptionSectionPresent', 'gridType', 'hour',
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'hoursAfterDataCutoff', 'iDirectionIncrement',
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'iDirectionIncrementGiven', 'iDirectionIncrementInDegrees',
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'iScansNegatively', 'iScansPositively', 'identifier',
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'ieeeFloats', 'ifsParam', 'ijDirectionIncrementGiven',
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'indicatorOfUnitOfTimeRange',
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'interpretationOfNumberOfPoints', 'isConstant',
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'isHindcast', 'isOctahedral', 'is_uerra',
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'jDirectionIncrementGiven', 'jPointsAreConsecutive',
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'jScansPositively', 'julianDay', 'kurtosis', 'latLonValues',
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'latitudeOfFirstGridPoint', 'latitudeOfFirstGridPointInDegrees',
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'latitudeOfLastGridPoint', 'latitudeOfLastGridPointInDegrees', 'latitudes',
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'legBaseDate', 'legBaseTime', 'legNumber',
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'lengthOfHeaders', 'level', 'localDefinitionNumber',
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'localDir', 'localTablesVersion',
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'longitudeOfFirstGridPoint', 'longitudeOfFirstGridPointInDegrees',
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'longitudeOfLastGridPoint', 'longitudeOfLastGridPointInDegrees', 'longitudes',
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'mAngleMultiplier', 'mBasicAngle', 'marsClass',
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'marsStream', 'marsType', 'masterDir', 'maximum',
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'md5Headers', 'md5Section1', 'md5Section3', 'md5Section4',
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'md5Section5', 'md5Section6', 'md5Section7', 'minimum',
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'minute', 'minutesAfterDataCutoff', 'missingValue',
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'modelName', 'month', 'name', 'nameECMF',
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'nameOfFirstFixedSurface', 'nameOfSecondFixedSurface',
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'neitherPresent', 'numberOfDataPoints',
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'numberOfForecastsInEnsemble', 'numberOfMissing',
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'numberOfOctectsForNumberOfPoints', 'numberOfSection',
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'numberOfValues', 'oceanAtmosphereCoupling',
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'offsetValuesBy', 'optimizeScaleFactor', 'packingError',
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'packingType', 'paramId', 'paramIdECMF',
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'parameterCategory', 'parameterName', 'parameterNumber',
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'parameterUnits', 'perturbationNumber', 'pressureUnits',
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'productDefinitionTemplateNumber',
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'productDefinitionTemplateNumberInternal', 'productType',
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'productionStatusOfProcessedData', 'radius',
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'referenceDate', 'referenceValue', 'referenceValueError',
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'resolutionAndComponentFlags', 'resolutionAndComponentFlags1',
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'resolutionAndComponentFlags2', 'resolutionAndComponentFlags6',
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'resolutionAndComponentFlags7', 'resolutionAndComponentFlags8',
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'scaleFactorOfEarthMajorAxis', 'scaleFactorOfEarthMinorAxis',
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'scaleFactorOfFirstFixedSurface', 'scaleFactorOfRadiusOfSphericalEarth',
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'scaleFactorOfSecondFixedSurface', 'scaleValuesBy',
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'scaledValueOfEarthMajorAxis', 'scaledValueOfEarthMinorAxis',
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'scaledValueOfFirstFixedSurface', 'scaledValueOfRadiusOfSphericalEarth',
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'scaledValueOfSecondFixedSurface', 'scanningMode',
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'scanningMode5', 'scanningMode6', 'scanningMode7',
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'scanningMode8', 'second', 'section0Length',
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'section1Length', 'section2Length', 'section2Padding',
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'section3Length', 'section3Padding', 'section4Length',
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'section5Length', 'section6Length', 'section7Length',
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'section8Length', 'sectionNumber', 'selectStepTemplateInstant', 'selectStepTemplateInterval',
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'setBitsPerValue', 'setCalendarId', 'shapeOfTheEarth',
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'shortName', 'shortNameECMF', 'significanceOfReferenceTime',
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'skewness', 'sourceOfGridDefinition', 'standardDeviation',
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'startStep', 'stepRange', 'stepType', 'stepTypeInternal',
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'stepUnits', 'stream', 'subCentre',
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'subdivisionsOfBasicAngle', 'tablesVersion',
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'tablesVersionLatest', 'tempPressureUnits', 'topLevel',
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'totalLength', 'type', 'typeOfEnsembleForecast',
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'typeOfFirstFixedSurface', 'typeOfGeneratingProcess',
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'typeOfLevel', 'typeOfOriginalFieldValues',
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'typeOfProcessedData', 'typeOfSecondFixedSurface', 'units',
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'unitsECMF', 'unitsOfFirstFixedSurface',
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'unitsOfSecondFixedSurface', 'unpackedError',
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'uvRelativeToGrid', 'validityDate', 'validityTime',
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'values', 'year']
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KNOWN_BUFR_KEYS = ['edition', 'masterTableNumber', 'bufrHeaderSubCentre', 'bufrHeaderCentre',
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'updateSequenceNumber', 'dataCategory', 'dataSubCategory', 'masterTablesVersionNumber',
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'localTablesVersionNumber', 'typicalYearOfCentury', 'typicalMonth', 'typicalDay',
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'typicalHour', 'typicalMinute', 'typicalDate', 'typicalTime', 'rdbType', 'newSubtype', 'rdbtimeDay',
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'rdbtimeHour', 'rdbtimeMinute', 'rdbtimeSecond', 'rectimeDay', 'rectimeHour', 'rectimeMinute', 'rectimeSecond',
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'correction1', 'correction1Part', 'correction2', 'correction2Part', 'correction3', 'correction3Part',
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'correction4', 'correction4Part', 'qualityControl', 'numberOfSubsets', 'localLatitude',
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'localLongitude', 'observedData', 'compressedData', 'unexpandedDescriptors', 'subsetNumber', '#1#blockNumber',
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'#1#blockNumber->percentConfidence', '#1#stationNumber', '#1#stationNumber->percentConfidence',
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'#1#stationType', '#1#stationType->percentConfidence', '#1#year', '#1#year->percentConfidence',
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'#1#month', '#1#month->percentConfidence', '#1#day', '#1#day->percentConfidence', '#1#hour',
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'#1#hour->percentConfidence', '#1#minute', '#1#minute->percentConfidence', '#1#latitude',
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'#1#latitude->percentConfidence', '#1#longitude', '#1#longitude->percentConfidence',
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'#1#heightOfStation', '#1#heightOfStation->percentConfidence', '#1#nonCoordinatePressure',
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'#1#nonCoordinatePressure->percentConfidence', '#1#pressureReducedToMeanSeaLevel',
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'#1#pressureReducedToMeanSeaLevel->percentConfidence', '#1#3HourPressureChange',
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'#1#3HourPressureChange->percentConfidence', '#1#characteristicOfPressureTendency',
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'#1#characteristicOfPressureTendency->percentConfidence', '#1#windDirectionAt10M',
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'#1#windDirectionAt10M->percentConfidence', '#1#windSpeedAt10M',
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'#1#windSpeedAt10M->percentConfidence',
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'#1#airTemperatureAt2M', '#1#airTemperatureAt2M->percentConfidence', '#1#dewpointTemperatureAt2M',
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'#1#dewpointTemperatureAt2M->percentConfidence', '#1#relativeHumidity',
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'#1#relativeHumidity->percentConfidence', '#1#horizontalVisibility',
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'#1#horizontalVisibility->percentConfidence', '#1#presentWeather',
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'#1#presentWeather->percentConfidence', '#1#pastWeather1', '#1#pastWeather1->percentConfidence',
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'#1#pastWeather2', '#1#pastWeather2->percentConfidence', '#1#cloudCoverTotal',
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'#1#cloudCoverTotal->percentConfidence', '#1#verticalSignificanceSurfaceObservations',
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'#1#verticalSignificanceSurfaceObservations->percentConfidence', '#1#cloudAmount',
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'#1#cloudAmount->percentConfidence', '#1#heightOfBaseOfCloud',
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'#1#heightOfBaseOfCloud->percentConfidence', '#1#cloudType', '#1#cloudType->percentConfidence',
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'#2#cloudType', '#2#cloudType->percentConfidence', '#3#cloudType', '#3#cloudType->percentConfidence',
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'#2#verticalSignificanceSurfaceObservations',
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'#2#verticalSignificanceSurfaceObservations->percentConfidence',
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'#2#cloudAmount', '#2#cloudAmount->percentConfidence', '#4#cloudType',
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'#4#cloudType->percentConfidence', '#2#heightOfBaseOfCloud',
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'#2#heightOfBaseOfCloud->percentConfidence',
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'#3#verticalSignificanceSurfaceObservations',
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'#3#verticalSignificanceSurfaceObservations->percentConfidence',
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'#3#cloudAmount', '#3#cloudAmount->percentConfidence', '#5#cloudType',
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'#5#cloudType->percentConfidence',
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'#3#heightOfBaseOfCloud', '#3#heightOfBaseOfCloud->percentConfidence',
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'#4#verticalSignificanceSurfaceObservations',
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'#4#verticalSignificanceSurfaceObservations->percentConfidence', '#4#cloudAmount',
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'#4#cloudAmount->percentConfidence',
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'#6#cloudType', '#6#cloudType->percentConfidence', '#4#heightOfBaseOfCloud',
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'#4#heightOfBaseOfCloud->percentConfidence',
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'#5#verticalSignificanceSurfaceObservations',
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'#5#verticalSignificanceSurfaceObservations->percentConfidence', '#5#cloudAmount',
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'#5#cloudAmount->percentConfidence', '#7#cloudType', '#7#cloudType->percentConfidence',
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'#5#heightOfBaseOfCloud',
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'#5#heightOfBaseOfCloud->percentConfidence', '#1#totalPrecipitationPast6Hours',
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'#1#totalPrecipitationPast6Hours->percentConfidence', '#1#totalSnowDepth',
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'#1#totalSnowDepth->percentConfidence',
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'#1#centre', '#1#generatingApplication']
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class TestGribFile(unittest.TestCase):
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"""Test GribFile functionality."""
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def test_memory_management(self):
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"""Messages in GribFile can be opened and closed properly."""
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with GribFile(TESTGRIB) as grib_file:
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self.assertEqual(len(grib_file), 5)
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for i in range(len(grib_file)):
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msg = GribMessage(grib_file)
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self.assertEqual(msg["shortName"], "msl")
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self.assertEqual(msg['count'], i + 1)
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self.assertEqual(len(grib_file.open_messages), 5)
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self.assertEqual(len(grib_file.open_messages), 0)
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def test_message_counting_works(self):
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"""The GribFile is aware of its messages."""
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with GribFile(TESTGRIB) as grib_file:
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msg_count = len(grib_file)
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self.assertEqual(msg_count, 5)
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def test_iterator_protocol(self):
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"""The GribFile allows pythonic iteration over all messages."""
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step_ranges = []
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with GribFile(TESTGRIB) as grib_file:
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for msg in grib_file:
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step_ranges.append(msg["stepRange"])
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self.assertSequenceEqual(step_ranges, ["0", "6", "12", "18", "24"])
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def test_read_past_last_message(self):
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"""Trying to open message on exhausted GRIB file raises IOError."""
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with GribFile(TESTGRIB) as grib_file:
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for _ in range(len(grib_file)):
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GribMessage(grib_file)
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self.assertRaises(IOError, lambda: GribMessage(grib_file))
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def test_read_invalid_file(self):
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"""Trying to open message on nonexistent GRIB file raises IOError."""
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with NamedTemporaryFile(mode='r') as f:
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with GribFile(f.name) as grib_file:
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self.assertRaises(IOError, lambda: GribMessage(grib_file))
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class TestGribMessage(unittest.TestCase):
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"""Test GribMessage functionality."""
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def test_metadata(self):
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"""Metadata is read correctly from GribMessage."""
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with GribFile(TESTGRIB) as grib_file:
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msg = GribMessage(grib_file)
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msg_keys = list(msg.keys())
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for key in KNOWN_GRIB_KEYS:
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assert key in msg_keys, "key '%s' not found" % key
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# Size of message in bytes
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self.assertEqual(msg.size(), 160219)
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self.assertEqual(len(list(msg.keys())), len(msg))
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def test_missing_message_behaviour(self):
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"""Key with MISSING value."""
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with GribFile(TESTGRIB) as grib_file:
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msg = GribMessage(grib_file)
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self.assertTrue(msg.missing("scaleFactorOfSecondFixedSurface"))
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msg["scaleFactorOfSecondFixedSurface"] = 5
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msg.set_missing("scaleFactorOfSecondFixedSurface")
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# with self.assertRaises(KeyError):
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# msg["scaleFactorOfSecondFixedSurface"]
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def test_value_setting(self):
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"""Keys can be set properly."""
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with GribFile(TESTGRIB) as grib_file:
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msg = GribMessage(grib_file)
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msg["scaleFactorOfSecondFixedSurface"] = 5
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msg["values"] = [1, 2, 3]
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self.assertEqual(msg['scaleFactorOfSecondFixedSurface'], 5)
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def test_multi_value_setting(self):
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"""Multiple keys/values can be set properly."""
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msg = GribMessage(sample='GRIB1')
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msg['paramId', 'stepType', 'edition'] = 49, 'avg', 2
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self.assertEqual(msg['shortName'], '10fg')
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# Another test
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with GribFile(TESTGRIB) as grib_file:
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msg = GribMessage(grib_file)
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msg['setLocalDefinition', 'localDefinitionNumber'] = 1, 25
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msg['typeOfFirstFixedSurface', 'typeOfSecondFixedSurface'] = 1, 8
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msg[('typeOfFirstFixedSurface', 'typeOfSecondFixedSurface')] = (1, 8) # Also works
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self.assertEqual(msg['localDefinitionNumber'], 25)
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self.assertEqual(msg['typeOfLevel'], 'entireAtmosphere')
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def test_serialize(self):
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"""Message can be serialized to file."""
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with GribFile(TESTGRIB) as grib_file:
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msg = GribMessage(grib_file)
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with open(TEST_OUTPUT, "wb") as test:
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msg.write(test)
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os.unlink(TEST_OUTPUT)
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def test_clone(self):
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"""Messages can be used to produce clone Messages."""
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with GribFile(TESTGRIB) as grib_file:
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msg = GribMessage(grib_file)
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msg2 = GribMessage(clone=msg)
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self.assertSequenceEqual(list(msg.keys()), list(msg2.keys()))
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class TestGribIndex(unittest.TestCase):
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"""Test GribIndex functionality."""
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def test_memory_management(self):
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"""GribIndex closes GribMessages properly."""
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with GribIndex(TESTGRIB, TEST_KEYS) as idx:
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idx.select(SELECTION_DICTIONARY)
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self.assertEqual(len(idx.open_messages), 1)
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self.assertEqual(len(idx.open_messages), 0)
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def test_create_and_serialize_index(self):
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"""GribIndex can be saved to file, file can be added to index."""
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with GribIndex(TESTGRIB, TEST_KEYS) as idx:
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idx.write(TEST_INDEX)
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with GribIndex(file_index=TEST_INDEX) as idx:
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idx.add(TESTGRIB)
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os.unlink(TEST_INDEX)
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def test_index_comprehension(self):
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"""GribIndex understands underlying GRIB index properly."""
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with GribIndex(TESTGRIB, TEST_KEYS) as idx:
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self.assertEqual(idx.size(TEST_KEYS[1]), 5)
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self.assertSequenceEqual(idx.values(TEST_KEYS[1]), TEST_STEPRANGE)
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with self.assertRaises(IndexNotSelectedError):
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# Note: The following will issue a message to stderr:
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# ECCODES ERROR : please select a value for index key "dataDate"
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# This is expected behaviour
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idx.select({TEST_KEYS[1]: TEST_VALUES[0]})
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# Now it will be OK as we have selected all necessary keys
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idx.select(SELECTION_DICTIONARY)
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self.assertEqual(len(idx.open_messages), 1)
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class TestBufrFile(unittest.TestCase):
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"""Test BufrFile functionality."""
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def test_memory_management(self):
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"""Messages in BufrFile can be opened and closed properly."""
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with BufrFile(TESTBUFR) as bufr_file:
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self.assertEqual(len(bufr_file), 3)
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for i in range(len(bufr_file)):
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msg = BufrMessage(bufr_file)
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self.assertEqual(msg["bufrHeaderCentre"], 98)
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self.assertEqual(msg['count'], i + 1)
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self.assertEqual(len(bufr_file.open_messages), 3)
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self.assertEqual(len(bufr_file.open_messages), 0)
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def test_message_counting_works(self):
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"""The BufrFile is aware of its messages."""
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with BufrFile(TESTBUFR) as bufr_file:
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msg_count = len(bufr_file)
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self.assertEqual(msg_count, 3)
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def test_iterator_protocol(self):
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"""The BufrFile allows pythonic iteration over all messages."""
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latitudes = []
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with BufrFile(TESTBUFR) as bufr_file:
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for msg in bufr_file:
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latitudes.append(msg["localLatitude"])
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self.assertSequenceEqual(latitudes, [70.93, 77, 78.92])
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def test_read_past_last_message(self):
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"""Trying to open message on exhausted BUFR file raises IOError."""
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with BufrFile(TESTBUFR) as bufr_file:
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for _ in range(len(bufr_file)):
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BufrMessage(bufr_file)
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self.assertRaises(IOError, lambda: BufrMessage(bufr_file))
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def test_read_invalid_file(self):
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"""Trying to open message on nonexistent file raises IOError."""
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with NamedTemporaryFile(mode='r') as f:
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with BufrFile(f.name) as bufr_file:
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self.assertRaises(IOError, lambda: BufrMessage(bufr_file))
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class TestBufrMessage(unittest.TestCase):
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"""Test BufrMessage functionality"""
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def test_metadata(self):
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"""Metadata is read correctly from BufrMessage."""
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with BufrFile(TESTBUFR) as bufr_file:
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msg = BufrMessage(bufr_file)
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msg.unpack()
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msg_keys = list(msg.keys())
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self.assertEqual(len(msg_keys), 201)
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for key in KNOWN_BUFR_KEYS:
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assert key in msg_keys
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# Size of message in bytes
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self.assertEqual(msg.size(), 220)
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self.assertEqual(len(list(msg.keys())), len(msg))
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def test_content(self):
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"""Data values are read correctly from BufrMessage."""
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with BufrFile(TESTBUFR) as bufr_file:
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msg = BufrMessage(bufr_file)
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msg.unpack()
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self.assertEqual(msg["airTemperatureAt2M"], 274.5)
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# TODO: Test behaviour with missing messages (SUP-1874)
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def test_value_setting(self):
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"""Keys can be set properly."""
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with BufrFile(TESTBUFR) as bufr_file:
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msg = BufrMessage(bufr_file)
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key, val = "localLongitude", 5
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msg[key] = val
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self.assertEqual(msg[key], val)
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def test_serialize(self):
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"""Message can be serialized to file."""
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with BufrFile(TESTBUFR) as bufr_file:
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msg = BufrMessage(bufr_file)
|
|
with open(TEST_OUTPUT, "wb") as test:
|
|
msg.write(test)
|
|
os.unlink(TEST_OUTPUT)
|
|
|
|
def test_clone(self):
|
|
"""Messages can be used to produce clone Messages."""
|
|
with BufrFile(TESTBUFR) as bufr_file:
|
|
msg = BufrMessage(bufr_file)
|
|
msg2 = BufrMessage(clone=msg)
|
|
self.assertSequenceEqual(list(msg.keys()), list(msg2.keys()))
|
|
|
|
def test_copy_data(self):
|
|
"""Can copy data section from one message to another"""
|
|
bufr = BufrMessage(sample='BUFR3')
|
|
with BufrFile('../../data/bufr/metar_with_2_bias.bufr') as bufr_file:
|
|
bufrin = BufrMessage(bufr_file)
|
|
ivalues = (
|
|
0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
|
|
0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
|
|
0, 0, 0, 1, 1, 1, 1, 1, 1, 1,
|
|
1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
|
|
1, 1, 1, 1, 1, 0, 1, 1, 1, 1,
|
|
1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
|
|
1, 1, 1, 1, 1, 1, 1, 1, 0)
|
|
bufr['inputDataPresentIndicator'] = ivalues
|
|
bufr['edition'] = 3
|
|
bufr['masterTableNumber'] = 0
|
|
bufr['bufrHeaderSubCentre'] = 0
|
|
bufr['bufrHeaderCentre'] = 98
|
|
bufr['updateSequenceNumber'] = 1
|
|
bufr['dataCategory'] = 0
|
|
bufr['dataSubCategory'] = 140
|
|
bufr['masterTablesVersionNumber'] = 13
|
|
bufr['localTablesVersionNumber'] = 1
|
|
bufr['typicalYearOfCentury'] = 15
|
|
bufr['typicalMonth'] = 5
|
|
bufr['typicalDay'] = 4
|
|
bufr['typicalHour'] = 9
|
|
bufr['typicalMinute'] = 30
|
|
bufr['numberOfSubsets'] = 1
|
|
bufr['observedData'] = 1
|
|
bufr['compressedData'] = 0
|
|
ivalues = (
|
|
307011, 7006, 10004, 222000, 101023, 31031, 1031, 1032, 101023, 33007,
|
|
225000, 236000, 101023, 31031, 1031, 1032, 8024, 101001, 225255, 225000,
|
|
236000, 101023, 31031, 1031, 1032, 8024, 101001, 225255,
|
|
1063, 2001, 4001, 4002, 4003, 4004, 4005, 5002,
|
|
6002, 7001, 7006, 11001, 11016, 11017, 11002)
|
|
bufr['unexpandedDescriptors'] = ivalues
|
|
bufrin.unpack()
|
|
bufrin.copy_data(bufr)
|
|
with open(TEST_OUTPUT, 'wb') as test:
|
|
bufr.write(test)
|
|
os.unlink(TEST_OUTPUT)
|
|
|
|
|
|
if __name__ == "__main__":
|
|
unittest.main()
|